6RIM image
Deposition Date 2019-04-24
Release Date 2019-05-29
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6RIM
Keywords:
Title:
Crystal structure of the catalytic domain of the Weissela oryzae botulinum like toxin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.20
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative botulinum-like toxin Wo
Gene (Uniprot):WOSG25_110680
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:498
Number of Molecules:8
Biological Source:Weissella oryzae
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
Crystal structure of the catalytic domain of the Weissella oryzae botulinum-like toxin.
Febs Lett. 593 1403 1410 (2019)
PMID: 31111466 DOI: 10.1002/1873-3468.13446

Abstact

Botulinum neurotoxins (BoNTs) are the most potent toxins known. So far, eight serotypes have been identified that all act as zinc-dependent endopeptidases targeting SNARE proteins and inhibiting the release of neurotransmitters. Recently, the first botulinum toxin-like protein was identified outside the Clostridial genus, designated BoNT/Wo in the genome of Weissella oryzae. Here, we report the 1.6 Å X-ray crystal structure of the light chain of BoNT/Wo (LC/Wo). LC/Wo presents the core fold common to BoNTs but has an unusually wide, open and negatively charged catalytic pocket, with an additional Ca2+ ion besides the zinc ion and a unique ß-hairpin motif. The structural information will help establish the substrate profile of BoNT/Wo and help our understanding of how BoNT evolved.

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Primary Citation of related structures