6RHE image
Deposition Date 2019-04-19
Release Date 2019-12-25
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6RHE
Keywords:
Title:
CpOGA D298N in complex with hOGA-derived S-GlcNAc peptide
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 61
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:O-GlcNAcase NagJ
Gene (Uniprot):nagJ
Mutagens:D298N
Chain IDs:A
Chain Length:592
Number of Molecules:1
Biological Source:Clostridium perfringens ATCC 13124
Polymer Type:polypeptide(L)
Molecule:ACE-ALA-HIS-CYS-GLY-NH2
Chain IDs:B (auth: D)
Chain Length:6
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Genetic recoding to dissect the roles of site-specific protein O-GlcNAcylation.
Nat.Struct.Mol.Biol. 26 1071 1077 (2019)
PMID: 31695185 DOI: 10.1038/s41594-019-0325-8

Abstact

Modification of specific Ser and Thr residues of nucleocytoplasmic proteins with O-GlcNAc, catalyzed by O-GlcNAc transferase (OGT), is an abundant posttranslational event essential for proper animal development and is dysregulated in various diseases. Due to the rapid concurrent removal by the single O-GlcNAcase (OGA), precise functional dissection of site-specific O-GlcNAc modification in vivo is currently not possible without affecting the entire O-GlcNAc proteome. Exploiting the fortuitous promiscuity of OGT, we show that S-GlcNAc is a hydrolytically stable and accurate structural mimic of O-GlcNAc that can be encoded in mammalian systems with CRISPR-Cas9 in an otherwise unperturbed O-GlcNAcome. Using this approach, we target an elusive Ser 405 O-GlcNAc site on OGA, showing that this site-specific modification affects OGA stability.

Legend

Protein

Chemical

Disease

Primary Citation of related structures