6RC3 image
Deposition Date 2019-04-11
Release Date 2020-02-19
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6RC3
Keywords:
Title:
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an adenine derivative
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.32 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NAD kinase 1
Gene (Uniprot):nadK1
Chain IDs:A
Chain Length:272
Number of Molecules:1
Biological Source:Listeria monocytogenes EGD-e
Primary Citation
From Substrate to Fragments to Inhibitor ActiveIn VivoagainstStaphylococcus aureus.
Acs Infect Dis. 6 422 435 (2020)
PMID: 32017533 DOI: 10.1021/acsinfecdis.9b00368

Abstact

Antibiotic resistance is a worldwide threat due to the decreasing supply of new antimicrobials. Novel targets and innovative strategies are urgently needed to generate pathbreaking drug compounds. NAD kinase (NADK) is essential for growth in most bacteria, as it supports critical metabolic pathways. Here, we report the discovery of a new class of antibacterials that targets bacterial NADK. We generated a series of small synthetic adenine derivatives to screen those harboring promising substituents in order to guide efficient fragment linking. This led to NKI1, a new lead compound inhibiting NADK that showed in vitro bactericidal activity against Staphylococcus aureus. In a murine model of infection, NKI1 restricted survival of the bacteria, including methicillin-resistant S. aureus. Collectively, these findings identify bacterial NADK as a potential drug target and NKI1 as a lead compound in the treatment of staphylococcal infections.

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