6RBG image
Deposition Date 2019-04-10
Release Date 2020-11-18
Last Version Date 2024-05-22
Entry Detail
PDB ID:
6RBG
Title:
full-length bacterial polysaccharide co-polymerase
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chain length determinant protein
Gene (Uniprot):wzzB
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:341
Number of Molecules:8
Biological Source:Escherichia coli (strain K12)
Ligand Molecules
Primary Citation
Structure of a full-length bacterial polysaccharide co-polymerase.
Nat Commun 12 369 369 (2021)
PMID: 33446644 DOI: 10.1038/s41467-020-20579-1

Abstact

Lipopolysaccharides are important components of the bacterial cell envelope that among other things act as a protective barrier against the environment and toxic molecules such as antibiotics. One of the most widely disseminated pathways of polysaccharide biosynthesis is the inner membrane bound Wzy-dependent pathway. Here we present the 3.0 Å structure of the co-polymerase component of this pathway, WzzB from E. coli solved by single-particle cryo-electron microscopy. The overall architecture is octameric and resembles a box jellyfish containing a large bell-shaped periplasmic domain with the 2-helix transmembrane domain from each protomer, positioned 32 Å apart, encircling a large empty transmembrane chamber. This structure also reveals the architecture of the transmembrane domain, including the location of key residues for the Wzz-family of proteins and the Wzy-dependent pathway present in many Gram-negative bacteria, explaining several of the previous biochemical and mutational studies and lays the foundation for future investigations.

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Chemical

Disease

Primary Citation of related structures
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