6R9V image
Entry Detail
PDB ID:
6R9V
Keywords:
Title:
Crystal structure of Pediococcus acidilactici lactate oxidase A94G mutant
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2019-04-04
Release Date:
2020-02-12
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
I 4 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Putative L-lactate oxidase
Chain IDs:A
Chain Length:370
Number of Molecules:1
Biological Source:Pediococcus acidilactici DSM 20284
Primary Citation
FMN-dependent oligomerization of putative lactate oxidase from Pediococcus acidilactici.
Plos One 15 e0223870 e0223870 (2020)
PMID: 32092083 DOI: 10.1371/journal.pone.0223870

Abstact

Lactate oxidases belong to a group of FMN-dependent enzymes and they catalyze a conversion of lactate to pyruvate with a release of hydrogen peroxide. Hydrogen peroxide is also utilized as a read out in biosensors to quantitate lactate levels in biological samples. Aerococcus viridans lactate oxidase is the best characterized lactate oxidase and our knowledge of lactate oxidases relies largely to studies conducted with that particular enzyme. Pediococcus acidilactici lactate oxidase is also commercially available for e.g. lactate measurements, but this enzyme has not been characterized in detail before. Here we report structural characterization of the recombinant enzyme and its co-factor dependent oligomerization. The crystal structures revealed two distinct conformations in the loop closing the active site, consistent with previous biochemical studies implicating the role of loop in catalysis. Despite the structural conservation of active site residues, we were not able to detect either oxidase or monooxygenase activity when L-lactate was used as a substrate. Pediococcus acidilactici lactate oxidase is therefore an example of a misannotation of an FMN-dependent enzyme, which catalyzes likely a so far unknown oxidation reaction.

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