6R7R image
Deposition Date 2019-03-29
Release Date 2019-04-17
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6R7R
Title:
Crystal structure of the glutamate transporter homologue GltTk in complex with D-aspartate
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Proton/glutamate symporter, SDF family
Gene (Uniprot):TK0986
Chain IDs:A, B, C
Chain Length:438
Number of Molecules:3
Biological Source:Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Primary Citation
Binding and transport of D-aspartate by the glutamate transporter homolog Glt Tk .
Elife 8 ? ? (2019)
PMID: 30969168 DOI: 10.7554/eLife.45286

Abstact

Mammalian glutamate transporters are crucial players in neuronal communication as they perform neurotransmitter reuptake from the synaptic cleft. Besides L-glutamate and L-aspartate, they also recognize D-aspartate, which might participate in mammalian neurotransmission and/or neuromodulation. Much of the mechanistic insight in glutamate transport comes from studies of the archeal homologs GltPh from Pyrococcus horikoshii and GltTk from Thermococcus kodakarensis. Here, we show that GltTk transports D-aspartate with identical Na+: substrate coupling stoichiometry as L-aspartate, and that the affinities (Kd and Km) for the two substrates are similar. We determined a crystal structure of GltTk with bound D-aspartate at 2.8 Å resolution. Comparison of the L- and D-aspartate bound GltTk structures revealed that D-aspartate is accommodated with only minor rearrangements in the structure of the binding site. The structure explains how the geometrically different molecules L- and D-aspartate are recognized and transported by the protein in the same way.

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