6R3A image
Deposition Date 2019-03-19
Release Date 2019-10-23
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6R3A
Keywords:
Title:
BACTERIOPHAGE SPP1 MATURE CAPSID PROTEIN
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):13
Chain IDs:A, B, C, D, E, F, G
Chain Length:323
Number of Molecules:7
Biological Source:Bacillus phage SPP1
Ligand Molecules
Primary Citation
Structural transitions during the scaffolding-driven assembly of a viral capsid.
Nat Commun 10 4840 4840 (2019)
PMID: 31649265 DOI: 10.1038/s41467-019-12790-6

Abstact

Assembly of tailed bacteriophages and herpesviruses starts with formation of procapsids (virion precursors without DNA). Scaffolding proteins (SP) drive assembly by chaperoning the major capsid protein (MCP) to build an icosahedral lattice. Here we report near-atomic resolution cryo-EM structures of the bacteriophage SPP1 procapsid, the intermediate expanded procapsid with partially released SPs, and the mature capsid with DNA. In the intermediate state, SPs are bound only to MCP pentons and to adjacent subunits from hexons. SP departure results in the expanded state associated with unfolding of the MCP N-terminus and straightening of E-loops. The newly formed extensive inter-capsomere bonding appears to compensate for release of SPs that clasp MCP capsomeres together. Subsequent DNA packaging instigates bending of MCP A domain loops outwards, closing the hexons central opening and creating the capsid auxiliary protein binding interface. These findings provide a molecular basis for the sequential structural rearrangements during viral capsid maturation.

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Primary Citation of related structures