6R0P image
Entry Detail
PDB ID:
6R0P
Keywords:
Title:
Getah virus macro domain in complex with ADPr in double open conformation
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-03-13
Release Date:
2020-04-01
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Non-structural polyprotein
Chain IDs:A, B
Chain Length:168
Number of Molecules:2
Biological Source:Getah virus
Primary Citation
Snapshots of ADP-ribose bound to Getah virus macro domain reveal an intriguing choreography.
Sci Rep 10 14422 14422 (2020)
PMID: 32879358 DOI: 10.1038/s41598-020-70870-w

Abstact

Alphaviruses are (re-)emerging arboviruses of public health concern. The nsP3 gene product is one of the key players during viral replication. NsP3 comprises three domains: a macro domain, a zinc-binding domain and a hypervariable region. The macro domain is essential at both early and late stages of the replication cycle through ADP-ribose (ADPr) binding and de-ADP-ribosylation of host proteins. However, both its specific role and the precise molecular mechanism of de-ADP-ribosylation across specific viral families remains to be elucidated. Here we investigate by X-ray crystallography the mechanism of ADPr reactivity in the active site of Getah virus macro domain, which displays a peculiar substitution of one of the conserved residues in the catalytic loop. ADPr adopts distinct poses including a covalent bond between the C''1 of the ADPr and a conserved Togaviridae-specific cysteine. These different poses observed for ADPr may represent snapshots of the de-ADP-ribosylation mechanism, highlighting residues to be further characterised.

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