6QZO image
Deposition Date 2019-03-12
Release Date 2019-04-03
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6QZO
Keywords:
Title:
Crystal structure of DyP-type peroxidase from Cellulomonas bogoriensis
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 62
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Peroxidase
Gene (Uniprot):N869_13850
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:383
Number of Molecules:8
Biological Source:Cellulomonas bogoriensis 69B4 = DSM 16987
Primary Citation
Characterization of a New DyP-Peroxidase from the Alkaliphilic Cellulomonad, Cellulomonas bogoriensis.
Molecules 24 ? ? (2019)
PMID: 30934796 DOI: 10.3390/molecules24071208

Abstact

DyP-type peroxidases are heme-containing enzymes that have received increasing attention over recent years with regards to their potential as biocatalysts. A novel DyP-type peroxidase (CboDyP) was discovered from the alkaliphilic cellulomonad, Cellulomonas bogoriensis, which could be overexpressed in Escherichia coli. The biochemical characterization of the recombinant enzyme showed that it is a heme-containing enzyme capable to act as a peroxidase on several dyes. With the tested substrates, the enzyme is most active at acidic pH values and is quite tolerant towards solvents. The crystal structure of CboDyP was solved which revealed atomic details of the dimeric heme-containing enzyme. A peculiar feature of CboDyP is the presence of a glutamate in the active site which in most other DyPs is an aspartate, being part of the DyP-typifying sequence motif GXXDG. The E201D CboDyP mutant was prepared and analyzed which revealed that the mutant enzyme shows a significantly higher activity on several dyes when compared with the wild-type enzyme.

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Primary Citation of related structures