6QZH image
Deposition Date 2019-03-11
Release Date 2019-09-04
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6QZH
Title:
Structure of the human CC Chemokine Receptor 7 in complex with the intracellular allosteric antagonist Cmp2105 and the insertion protein Sialidase NanA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.24
R-Value Work:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:C-C chemokine receptor type 7,Sialidase A,C-C chemokine receptor type 7
Gene (Uniprot):CCR7
Chain IDs:A
Chain Length:785
Number of Molecules:1
Biological Source:Homo sapiens, Streptococcus pneumoniae
Primary Citation
Structural Basis for Allosteric Ligand Recognition in the Human CC Chemokine Receptor 7.
Cell 178 1222 1230.e10 (2019)
PMID: 31442409 DOI: 10.1016/j.cell.2019.07.028

Abstact

The CC chemokine receptor 7 (CCR7) balances immunity and tolerance by homeostatic trafficking of immune cells. In cancer, CCR7-mediated trafficking leads to lymph node metastasis, suggesting the receptor as a promising therapeutic target. Here, we present the crystal structure of human CCR7 fused to the protein Sialidase NanA by using data up to 2.1 Å resolution. The structure shows the ligand Cmp2105 bound to an intracellular allosteric binding pocket. A sulfonamide group, characteristic for various chemokine receptor ligands, binds to a patch of conserved residues in the Gi protein binding region between transmembrane helix 7 and helix 8. We demonstrate how structural data can be used in combination with a compound repository and automated thermal stability screening to identify and modulate allosteric chemokine receptor antagonists. We detect both novel (CS-1 and CS-2) and clinically relevant (CXCR1-CXCR2 phase-II antagonist Navarixin) CCR7 modulators with implications for multi-target strategies against cancer.

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