6QUP image
Entry Detail
PDB ID:
6QUP
Keywords:
Title:
Structural signatures in EPR3 define a unique class of plant carbohydrate receptors
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-02-28
Release Date:
2020-08-05
Method Details:
Experimental Method:
Resolution:
1.87 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:LysM type receptor kinase
Chain IDs:A
Chain Length:206
Number of Molecules:1
Biological Source:Lotus japonicus
Polymer Type:polypeptide(L)
Description:Nanobody 186 (Nb186)
Chain IDs:B
Chain Length:126
Number of Molecules:1
Biological Source:Lama glama
Primary Citation
Structural signatures in EPR3 define a unique class of plant carbohydrate receptors.
Nat Commun 11 3797 3797 (2020)
PMID: 32732998 DOI: 10.1038/s41467-020-17568-9

Abstact

Receptor-mediated perception of surface-exposed carbohydrates like lipo- and exo-polysaccharides (EPS) is important for non-self recognition and responses to microbial associated molecular patterns in mammals and plants. In legumes, EPS are monitored and can either block or promote symbiosis with rhizobia depending on their molecular composition. To establish a deeper understanding of receptors involved in EPS recognition, we determined the structure of the Lotus japonicus (Lotus) exopolysaccharide receptor 3 (EPR3) ectodomain. EPR3 forms a compact structure built of three putative carbohydrate-binding modules (M1, M2 and LysM3). M1 and M2 have unique βαββ and βαβ folds that have not previously been observed in carbohydrate binding proteins, while LysM3 has a canonical βααβ fold. We demonstrate that this configuration is a structural signature for a ubiquitous class of receptors in the plant kingdom. We show that EPR3 is promiscuous, suggesting that plants can monitor complex microbial communities though this class of receptors.

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