6QUG image
Entry Detail
PDB ID:
6QUG
Title:
GHK tagged MBP-Nup98(1-29)
Biological Source:
PDB Version:
Deposition Date:
2019-02-27
Release Date:
2020-05-27
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Maltodextrin-binding protein,Nucleoporin, putative
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:402
Number of Molecules:12
Biological Source:Escherichia coli, Tetrahymena thermophila (strain SB210)
Primary Citation
The copper(II)-binding tripeptide GHK, a valuable crystallization and phasing tag for macromolecular crystallography.
Acta Crystallogr D Struct Biol 76 1222 1232 (2020)
PMID: 33263328 DOI: 10.1107/S2059798320013741

Abstact

The growth of diffraction-quality crystals and experimental phasing remain two of the main bottlenecks in protein crystallography. Here, the high-affinity copper(II)-binding tripeptide GHK was fused to the N-terminus of a GFP variant and an MBP-FG peptide fusion. The GHK tag promoted crystallization, with various residues (His, Asp, His/Pro) from symmetry molecules completing the copper(II) square-pyramidal coordination sphere. Rapid structure determination by copper SAD phasing could be achieved, even at a very low Bijvoet ratio or after significant radiation damage. When collecting highly redundant data at a wavelength close to the copper absorption edge, residual S-atom positions could also be located in log-likelihood-gradient maps and used to improve the phases. The GHK copper SAD method provides a convenient way of both crystallizing and phasing macromolecular structures, and will complement the current trend towards native sulfur SAD and MR-SAD phasing.

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Primary Citation of related structures