6QTM image
Deposition Date 2019-02-25
Release Date 2019-09-18
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6QTM
Keywords:
Title:
Crystal structure of the Sir4 H-BRCT domain in complex with Ty5 pS1095 peptide
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Regulatory protein SIR4
Gene (Uniprot):SIR4
Chain IDs:A, B, C
Chain Length:127
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Ribonuclease H
Chain IDs:D, E, F
Chain Length:17
Number of Molecules:3
Biological Source:Saccharomyces paradoxus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
SEP D SER modified residue
Ligand Molecules
Primary Citation
The Sir4 H-BRCT domain interacts with phospho-proteins to sequester and repress yeast heterochromatin.
Embo J. 38 e101744 e101744 (2019)
PMID: 31515872 DOI: 10.15252/embj.2019101744

Abstact

In Saccharomyces cerevisiae, the silent information regulator (SIR) proteins Sir2/3/4 form a complex that suppresses transcription in subtelomeric regions and at the homothallic mating-type (HM) loci. Here, we identify a non-canonical BRCA1 C-terminal domain (H-BRCT) in Sir4, which is responsible for tethering telomeres to the nuclear periphery. We show that Sir4 H-BRCT and the closely related Dbf4 H-BRCT serve as selective phospho-epitope recognition domains that bind to a variety of phosphorylated target peptides. We present detailed structural information about the binding mode of established Sir4 interactors (Esc1, Ty5, Ubp10) and identify several novel interactors of Sir4 H-BRCT, including the E3 ubiquitin ligase Tom1. Based on these findings, we propose a phospho-peptide consensus motif for interaction with Sir4 H-BRCT and Dbf4 H-BRCT. Ablation of the Sir4 H-BRCT phospho-peptide interaction disrupts SIR-mediated repression and perinuclear localization. In conclusion, the Sir4 H-BRCT domain serves as a hub for recruitment of phosphorylated target proteins to heterochromatin to properly regulate silencing and nuclear order.

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Primary Citation of related structures