6QTB image
Deposition Date 2019-02-22
Release Date 2019-08-07
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6QTB
Keywords:
Title:
Crystal structure of Rea1-MIDAS/Ytm1-UBL complex from Chaetomium thermophilum
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.89 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Midasin,Midasin
Gene (Uniprot):CTHT_0069750
Chain IDs:A, C (auth: D)
Chain Length:280
Number of Molecules:2
Biological Source:Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Polymer Type:polypeptide(L)
Molecule:Ribosome biogenesis protein YTM1
Gene (Uniprot):YTM1
Chain IDs:B, D (auth: E)
Chain Length:101
Number of Molecules:2
Biological Source:Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Primary Citation
Crystal structures of Rea1-MIDAS bound to its ribosome assembly factor ligands resembling integrin-ligand-type complexes.
Nat Commun 10 3050 3050 (2019)
PMID: 31296859 DOI: 10.1038/s41467-019-10922-6

Abstact

The Rea1 AAA+-ATPase dislodges assembly factors from pre-60S ribosomes upon ATP hydrolysis, thereby driving ribosome biogenesis. Here, we present crystal structures of Rea1-MIDAS, the conserved domain at the tip of the flexible Rea1 tail, alone and in complex with its substrate ligands, the UBL domains of Rsa4 or Ytm1. These complexes have structural similarity to integrin α-subunit domains when bound to extracellular matrix ligands, which for integrin biology is a key determinant for force-bearing cell-cell adhesion. However, the presence of additional motifs equips Rea1-MIDAS for its tasks in ribosome maturation. One loop insert cofunctions as an NLS and to activate the mechanochemical Rea1 cycle, whereas an additional β-hairpin provides an anchor to hold the ligand UBL domains in place. Our data show the versatility of the MIDAS fold for mechanical force transmission in processes as varied as integrin-mediated cell adhesion and mechanochemical removal of assembly factors from pre-ribosomes.

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