6QT9 image
Deposition Date 2019-02-22
Release Date 2019-04-10
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6QT9
Keywords:
Title:
Cryo-EM structure of SH1 full particle.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ORF 25
Chain IDs:A, C (auth: D)
Chain Length:226
Number of Molecules:2
Biological Source:Haloarcula hispanica virus SH1
Polymer Type:polypeptide(L)
Molecule:ORF 25
Chain IDs:B (auth: C), D (auth: E), E (auth: F), F (auth: G), G (auth: H), H (auth: I), I (auth: J), J (auth: K), K (auth: L), L (auth: M)
Chain Length:173
Number of Molecules:10
Biological Source:Haloarcula hispanica virus SH1
Polymer Type:polypeptide(L)
Molecule:VP13
Chain IDs:DA (auth: W)
Chain Length:80
Number of Molecules:1
Biological Source:Haloarcula hispanica virus SH1
Polymer Type:polypeptide(L)
Molecule:VP12
Chain IDs:CA (auth: X)
Chain Length:24
Number of Molecules:1
Biological Source:Haloarcula hispanica virus SH1
Polymer Type:polypeptide(L)
Molecule:ORF 31
Chain IDs:BA (auth: Y)
Chain Length:135
Number of Molecules:1
Biological Source:Haloarcula hispanica virus SH1
Polymer Type:polypeptide(L)
Molecule:ORF 24
Chain IDs:M (auth: a), N (auth: b), O (auth: c), P (auth: d), Q (auth: e), R (auth: f), U (auth: i), V (auth: j), W (auth: k), Y (auth: m), AA (auth: o)
Chain Length:226
Number of Molecules:11
Biological Source:Haloarcula hispanica virus SH1
Polymer Type:polypeptide(L)
Molecule:ORF 24
Chain IDs:S (auth: g), X (auth: l), Z (auth: n)
Chain Length:225
Number of Molecules:3
Biological Source:Haloarcula hispanica virus SH1
Polymer Type:polypeptide(L)
Molecule:ORF 24
Chain IDs:T (auth: h)
Chain Length:175
Number of Molecules:1
Biological Source:Haloarcula hispanica virus SH1
Ligand Molecules
Primary Citation
Assembly of complex viruses exemplified by a halophilic euryarchaeal virus.
Nat Commun 10 1456 1456 (2019)
PMID: 30926810 DOI: 10.1038/s41467-019-09451-z

Abstact

Many of the largest known viruses belong to the PRD1-adeno structural lineage characterised by conserved pseudo-hexameric capsomers composed of three copies of a single major capsid protein (MCP). Here, by high-resolution cryo-EM analysis, we show that a class of archaeal viruses possess hetero-hexameric MCPs which mimic the PRD1-adeno lineage trimer. These hetero-hexamers are built from heterodimers and utilise a jigsaw-puzzle system of pegs and holes, and underlying minor capsid proteins, to assemble the capsid laterally from the 5-fold vertices. At these vertices proteins engage inwards with the internal membrane vesicle whilst 2-fold symmetric horn-like structures protrude outwards. The horns are assembled from repeated globular domains attached to a central spine, presumably facilitating multimeric attachment to the cell receptor. Such viruses may represent precursors of the main PRD1-adeno lineage, similarly engaging cell-receptors via 5-fold spikes and using minor proteins to define particle size.

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Primary Citation of related structures