6QRZ image
Deposition Date 2019-02-20
Release Date 2019-04-24
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6QRZ
Keywords:
Title:
Crystal structure of R2-like ligand-binding oxidase from Sulfolobus acidocaldarius solved by 3D micro-crystal electron diffraction
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.33
R-Value Work:
0.31
R-Value Observed:
0.31
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribonucleoside-diphosphate reductase
Gene (Uniprot):Saci_2188
Chain IDs:A
Chain Length:328
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639
Primary Citation
Solving a new R2lox protein structure by microcrystal electron diffraction.
Sci Adv 5 eaax4621 eaax4621 (2019)
PMID: 31457106 DOI: 10.1126/sciadv.aax4621

Abstact

Microcrystal electron diffraction (MicroED) has recently shown potential for structural biology. It enables the study of biomolecules from micrometer-sized 3D crystals that are too small to be studied by conventional x-ray crystallography. However, to date, MicroED has only been applied to redetermine protein structures that had already been solved previously by x-ray diffraction. Here, we present the first new protein structure-an R2lox enzyme-solved using MicroED. The structure was phased by molecular replacement using a search model of 35% sequence identity. The resulting electrostatic scattering potential map at 3.0-Å resolution was of sufficient quality to allow accurate model building and refinement. The dinuclear metal cofactor could be located in the map and was modeled as a heterodinuclear Mn/Fe center based on previous studies. Our results demonstrate that MicroED has the potential to become a widely applicable tool for revealing novel insights into protein structure and function.

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