6QRQ image
Entry Detail
PDB ID:
6QRQ
Title:
Apo conformation of chemotaxis sensor ODP
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-02-19
Release Date:
2019-06-19
Method Details:
Experimental Method:
Resolution:
2.56 Å
R-Value Free:
0.25
R-Value Work:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Oxygen-binding diiron protein
Chain IDs:A (auth: B), B (auth: A), C, D
Chain Length:253
Number of Molecules:4
Biological Source:Thermotoga maritima
Primary Citation
A di-iron protein recruited as an Fe[II] and oxygen sensor for bacterial chemotaxis functions by stabilizing an iron-peroxy species.
Proc.Natl.Acad.Sci.USA 116 14955 14960 (2019)
PMID: 31270241 DOI: 10.1073/pnas.1904234116

Abstact

Many bacteria contain cytoplasmic chemoreceptors that lack sensor domains. Here, we demonstrate that such cytoplasmic receptors found in 8 different bacterial and archaeal phyla genetically couple to metalloproteins related to β-lactamases and nitric oxide reductases. We show that this oxygen-binding di-iron protein (ODP) acts as a sensor for chemotactic responses to both iron and oxygen in the human pathogen Treponema denticola (Td). The ODP di-iron site binds oxygen at high affinity to reversibly form an unusually stable μ-peroxo adduct. Crystal structures of ODP from Td and the thermophile Thermotoga maritima (Tm) in the Fe[III]2-O22-, Zn[II], and apo states display differences in subunit association, conformation, and metal coordination that indicate potential mechanisms for sensing. In reconstituted systems, iron-peroxo ODP destabilizes the phosphorylated form of the receptor-coupled histidine kinase CheA, thereby providing a biochemical link between oxygen sensing and chemotaxis in diverse prokaryotes, including anaerobes of ancient origin.

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