6QP2 image
Entry Detail
PDB ID:
6QP2
Keywords:
Title:
Crystal structure of the PLP-bound C-S lyase from Staphylococcus hominis
Biological Source:
PDB Version:
Deposition Date:
2019-02-13
Release Date:
2020-03-04
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Aminotransferase
Chain IDs:A, B
Chain Length:421
Number of Molecules:2
Biological Source:Staphylococcus hominis
Polymer Type:polypeptide(L)
Description:Polyhistidine tag
Chain IDs:C
Chain Length:6
Number of Molecules:1
Biological Source:unidentified
Ligand Molecules
Primary Citation
The molecular basis of thioalcohol production in human body odour.
Sci Rep 10 12500 12500 (2020)
PMID: 32719469 DOI: 10.1038/s41598-020-68860-z

Abstact

Body odour is a characteristic trait of Homo sapiens, however its role in human behaviour and evolution is poorly understood. Remarkably, body odour is linked to the presence of a few species of commensal microbes. Herein we discover a bacterial enzyme, limited to odour-forming staphylococci that are able to cleave odourless precursors of thioalcohols, the most pungent components of body odour. We demonstrated using phylogenetics, biochemistry and structural biology that this cysteine-thiol lyase (C-T lyase) is a PLP-dependent enzyme that moved horizontally into a unique monophyletic group of odour-forming staphylococci about 60 million years ago, and has subsequently tailored its enzymatic function to human-derived thioalcohol precursors. Significantly, transfer of this enzyme alone to non-odour producing staphylococci confers odour production, demonstrating that this C-T lyase is both necessary and sufficient for thioalcohol formation. The structure of the C-T lyase compared to that of other related enzymes reveals how the adaptation to thioalcohol precursors has evolved through changes in the binding site to create a constrained hydrophobic pocket that is selective for branched aliphatic thioalcohol ligands. The ancestral acquisition of this enzyme, and the subsequent evolution of the specificity for thioalcohol precursors implies that body odour production in humans is an ancient process.

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Primary Citation of related structures