ISDA

Deposition Date 2019-01-13

Release Date 2020-02-05

Last Version Date 2024-01-24

Entry Detail

PDB ID:

6QGV

Keywords:

OXIDOREDUCTASE

Title:

HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with a Spiro[4.5]decanone inhibitor (JPHM-2-167)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.40 Å

R-Value Free:

0.17

R-Value Work:

0.15

R-Value Observed:

0.15

Space Group:

H 3 2

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Egl nine homolog 1
Gene (Uniprot):EGLN1
Chain IDs:A
Chain Length:233
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9GZT9 Pfam ID:PF13640 EC:1.14.11.2

Ligand Molecules

GOL

IPA

J2H

SO4

Primary Citation

Studies on spiro[4.5]decanone prolyl hydroxylase domain inhibitors.

Holt-Martyn, J.P, Tumber, A, Rahman, M.Z, Lippl, K, Figg Jr, W, McDonough, M.A, Chowdhury, R, Schofield, C.J, Chowdhury, R, Candela-Lena, J.I, Chan, M.C, Greenald, D.J, Yeoh, K.K, Tian, Y.M, McDonough, M.A, Tumber, A, Rose, N.R, Conejo-Garcia, A, Demetriades, M, Mathavan, S, Kawamura, A, Lee, M.K, van Eeden, F, Pugh, C.W, Ratcliffe, P.J, Schofield, C.J, Holt-Martyn, J.P, Tumber, A, Rahman, M.Z, Lippl, K, Figg Jr, W, McDonough, M.A, Chowdhury, R, Schofield, C.J.Show

Medchemcomm 10 500 504 (2019)

PMID: 31057728 DOI: 10.1039/c8md00548f

Abstact

The 2-oxoglutarate (2OG) dependent hypoxia inducible factor (HIF) prolyl hydroxylases (PHDs) are targets for treatment of anaemia and other ischaemia related diseases. PHD inhibitors are in clinical trials; however, the number of reported templates for PHD inhibition is limited. We report structure-activity relationship and crystallographic studies on spiro[4.5]decanone containing PHD inhibitors. Together with other studies, our results reveal spiro[4.5]decanones as useful templates for generation of potent and selective 2OG oxygenase inhibitors.

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Primary Citation of related structures