6QEM image
Deposition Date 2019-01-08
Release Date 2019-03-06
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6QEM
Keywords:
Title:
E. coli DnaBC complex bound to ssDNA
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Replicative DNA helicase
Gene (Uniprot):dnaB
Chain IDs:A, B, C, D, E, F
Chain Length:471
Number of Molecules:6
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:DNA replication protein DnaC
Gene (Uniprot):dnaC
Chain IDs:G, H, I, J, K, L
Chain Length:245
Number of Molecules:6
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Molecule:ssDNA
Chain IDs:M
Chain Length:36
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
Physical Basis for the Loading of a Bacterial Replicative Helicase onto DNA.
Mol.Cell 74 173 184.e4 (2019)
PMID: 30797687 DOI: 10.1016/j.molcel.2019.01.023

Abstact

In cells, dedicated AAA+ ATPases deposit hexameric, ring-shaped helicases onto DNA to initiate chromosomal replication. To better understand the mechanisms by which helicase loading can occur, we used cryo-EM to determine sub-4-Å-resolution structures of the E. coli DnaB⋅DnaC helicase⋅loader complex with nucleotide in pre- and post-DNA engagement states. In the absence of DNA, six DnaC protomers latch onto and crack open a DnaB hexamer using an extended N-terminal domain, stabilizing this conformation through nucleotide-dependent ATPase interactions. Upon binding DNA, DnaC hydrolyzes ATP, allowing DnaB to isomerize into a topologically closed, pre-translocation state competent to bind primase. Our data show how DnaC opens the DnaB ring and represses the helicase prior to DNA binding and how DnaC ATPase activity is reciprocally regulated by DnaB and DNA. Comparative analyses reveal how the helicase loading mechanism of DnaC parallels and diverges from homologous AAA+ systems involved in DNA replication and transposition.

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Primary Citation of related structures