ISDA: 6QD6

Deposition Date 2018-12-31

Release Date 2019-12-18

Last Version Date 2024-11-13

Entry Detail

PDB ID:

6QD6

Keywords:

STRUCTURAL PROTEIN

Title:

Molecular scaffolds expand the nanobody toolkit for cryo-EM applications: crystal structure of Mb-cHopQ-Nb207

Biological Source:

Source Organism:

Helicobacter pylori (Taxon ID: 210)
Helicobacter pylori (strain G27) (Taxon ID: 563041)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.84 Å

R-Value Free:

0.23

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 1

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Mb-cHopQ-Nb207,Outer membrane protein,Mb-cHopQ-Nb207,Outer membrane protein,Mb-cHopQ-Nb207
Gene (Uniprot):hopQ
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:542
Number of Molecules:10
Biological Source:Helicobacter pylori, Helicobacter pylori (strain G27)

UniProt ID:B5Z8H1 Pfam ID:PF18304

Ligand Molecules

Primary Citation

Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM

Uchanski, T, Masiulis, S, Fischer, B, Kalichuk, V, Lopez-Sanchez, U, Zarkadas, E, Weckener, M, Sente, A, Ward, P, Wohlkonig, A, Zogg, T, Remaut, H, Naismith, J.H, Nury, H, Vranken, W, Aricescu, A.R, Pardon, E, Steyaert, J.Show

Nat.Methods 18 ? ? (2021)

DOI: 10.1038/s41592-020-01001-6

Primary Citation of related structures

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