6QAZ image
Deposition Date 2018-12-20
Release Date 2019-11-13
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6QAZ
Title:
Crystal structure of gp41-1 intein
Biological Source:
Source Organism:
metagenome (Taxon ID: 256318)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.02 Å
R-Value Free:
0.14
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:cyanophage-like gp41-1 intein
Chain IDs:A
Chain Length:128
Number of Molecules:1
Biological Source:metagenome
Primary Citation
The crystal structure of the naturally split gp41-1 intein guides the engineering of orthogonal split inteins from cis-splicing inteins.
Febs J. 287 1886 1898 (2020)
PMID: 31665813 DOI: 10.1111/febs.15113

Abstact

Protein trans-splicing catalyzed by split inteins has increasingly become useful as a protein engineering tool. We solved the 1.0 Å-resolution crystal structure of a fused variant from the naturally split gp41-1 intein, previously identified from environmental metagenomic sequence data. The structure of the 125-residue gp41-1 intein revealed a compact pseudo-C2-symmetry commonly found in the Hedgehog/Intein superfamily with extensive charge-charge interactions between the split N- and C-terminal intein fragments that are common among naturally occurring split inteins. We successfully created orthogonal split inteins by engineering a similar charge network into the same region of a cis-splicing intein. This strategy could be applicable for creating novel natural-like split inteins from other, more prevalent cis-splicing inteins. DATABASE: Structural data are available in the RCSB Protein Data Bank under the accession number 6QAZ.

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