6QA3 image
Deposition Date 2018-12-18
Release Date 2019-06-26
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6QA3
Title:
ERK2 mini-fragment binding
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.57 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Mitogen-activated protein kinase 1
Gene (Uniprot):MAPK1
Chain IDs:A
Chain Length:368
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Crystallographic screening using ultra-low-molecular-weight ligands to guide drug design.
Drug Discov Today 24 1081 1086 (2019)
PMID: 30878562 DOI: 10.1016/j.drudis.2019.03.009

Abstact

We present a novel crystallographic screening methodology (MiniFrags) that employs high-concentration aqueous soaks with a chemically diverse and ultra-low-molecular-weight library (heavy atom count 5-7) to identify ligand-binding hot and warm spots on proteins. We propose that MiniFrag screening represents a highly effective method for guiding optimisation of fragment-derived lead compounds or chemical tools and that the high screening hit rates reflect enhanced sampling of chemical space.

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Primary Citation of related structures