6Q32 image
Deposition Date 2018-12-03
Release Date 2021-02-17
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6Q32
Title:
The structure of the Mo-insertase domain Cnx1E (variant S269DD274S) from Arabidopsis thaliana in complex with Moco-AMP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.39 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Molybdopterin biosynthesis protein CNX1
Gene (Uniprot):CNX1
Mutations:S269D, D274S
Chain IDs:A
Chain Length:471
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Primary Citation
Mechanism of molybdate insertion into pterin-based molybdenum cofactors.
Nat.Chem. 13 758 765 (2021)
PMID: 34183818 DOI: 10.1038/s41557-021-00714-1

Abstact

The molybdenum cofactor (Moco) is found in the active site of numerous important enzymes that are critical to biological processes. The bidentate ligand that chelates molybdenum in Moco is the pyranopterin dithiolene (molybdopterin, MPT). However, neither the mechanism of molybdate insertion into MPT nor the structure of Moco prior to its insertion into pyranopterin molybdenum enzymes is known. Here, we report this final maturation step, where adenylated MPT (MPT-AMP) and molybdate are the substrates. X-ray crystallography of the Arabidopsis thaliana Mo-insertase variant Cnx1E S269D D274S identified adenylated Moco (Moco-AMP) as an unexpected intermediate in this reaction sequence. X-ray absorption spectroscopy revealed the first coordination sphere geometry of Moco trapped in the Cnx1E active site. We have used this structural information to deduce a mechanism for molybdate insertion into MPT-AMP. Given their high degree of structural and sequence similarity, we suggest that this mechanism is employed by all eukaryotic Mo-insertases.

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