6Q2Z image
Deposition Date 2018-12-03
Release Date 2019-06-12
Last Version Date 2024-07-03
Entry Detail
PDB ID:
6Q2Z
Title:
NMR solution structure of the HVO_2922 protein from Haloferax volcanii
Biological Source:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:UPF0339 family protein
Gene (Uniprot):HVO_2922
Chain IDs:A, B
Chain Length:60
Number of Molecules:2
Biological Source:Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
Ligand Molecules
Primary Citation
Solution Structure and Dynamics of the Small Protein HVO_2922 from Haloferax volcanii.
Chembiochem 21 149 156 (2020)
PMID: 31161645 DOI: 10.1002/cbic.201900085

Abstact

Past sequencing campaigns overlooked small proteins as they seemed to be irrelevant due to their small size. However, their occurrence is widespread, and there is growing evidence that these small proteins are in fact functionally very important in organisms found in all kingdoms of life. Within a global proteome analysis for small proteins of the archaeal model organism Haloferax volcanii, the HVO_2922 protein has been identified. It is differentially expressed in response to changes in iron and salt concentrations, thus suggesting that its expression is stress-regulated. The protein is conserved among Haloarchaea and contains an uncharacterized domain of unknown function (DUF1508, UPF0339 family protein). We elucidated the NMR solution structure, which shows that the isolated protein forms a symmetrical dimer. The dimerization is found to be concentration-dependent and essential for protein stability and most likely for its functionality, as mutagenesis at the dimer interface leads to a decrease in stability and protein aggregation.

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Primary Citation of related structures