6Q0B image
Deposition Date 2019-08-01
Release Date 2020-08-05
Last Version Date 2022-12-21
Entry Detail
PDB ID:
6Q0B
Title:
Poliovirus (Type 1 Mahoney), receptor-catalysed 135S particle incubated with anti-VP1 mAb at RT for 1 hr
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP1
Chain IDs:A (auth: 1)
Chain Length:302
Number of Molecules:1
Biological Source:Poliovirus type 1 (strain Mahoney)
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP2
Chain IDs:B (auth: 2)
Chain Length:272
Number of Molecules:1
Biological Source:Poliovirus type 1 (strain Mahoney)
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP3
Chain IDs:C (auth: 3)
Chain Length:238
Number of Molecules:1
Biological Source:Poliovirus type 1 (strain Mahoney)
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP4
Chain IDs:D (auth: 4)
Chain Length:70
Number of Molecules:1
Biological Source:Poliovirus type 1 (strain Mahoney)
Polymer Type:polypeptide(L)
Molecule:anti-VP1 mAb
Chain IDs:E (auth: 7)
Chain Length:520
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Cryo-EM structures reveal two distinct conformational states in a picornavirus cell entry intermediate.
Plos Pathog. 16 e1008920 e1008920 (2020)
PMID: 32997730 DOI: 10.1371/journal.ppat.1008920

Abstact

The virions of enteroviruses such as poliovirus undergo a global conformational change after binding to the cellular receptor, characterized by a 4% expansion, and by the opening of holes at the two and quasi-three-fold symmetry axes of the capsid. The resultant particle is called a 135S particle or A-particle and is thought to be on the pathway to a productive infection. Previously published studies have concluded that the membrane-interactive peptides, namely VP4 and the N-terminus of VP1, are irreversibly externalized in the 135S particle. However, using established protocols to produce the 135S particle, and single particle cryo-electron microscopy methods, we have identified at least two unique states that we call the early and late 135S particle. Surprisingly, only in the "late" 135S particles have detectable levels of the VP1 N-terminus been trapped outside the capsid. Moreover, we observe a distinct density inside the capsid that can be accounted for by VP4 that remains associated with the genome. Taken together our results conclusively demonstrate that the 135S particle is not a unique conformation, but rather a family of conformations that could exist simultaneously.

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Primary Citation of related structures