6PZ8 image
Deposition Date 2019-07-31
Release Date 2019-10-09
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6PZ8
Title:
MERS S0 trimer in complex with variable domain of antibody G2
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.19 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:S protein
Chain IDs:A, E, I
Chain Length:472
Number of Molecules:3
Biological Source:Middle East respiratory syndrome-related coronavirus
Polymer Type:polypeptide(L)
Molecule:S protein
Chain IDs:B, F (auth: J), J (auth: F)
Chain Length:726
Number of Molecules:3
Biological Source:Middle East respiratory syndrome-related coronavirus
Polymer Type:polypeptide(L)
Molecule:G2 heavy chain
Chain IDs:C (auth: H), G (auth: C), K (auth: D)
Chain Length:229
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:G2 light chain
Chain IDs:D (auth: L), H (auth: G), L (auth: K)
Chain Length:218
Number of Molecules:3
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural Definition of a Neutralization-Sensitive Epitope on the MERS-CoV S1-NTD.
Cell Rep 28 3395 3405.e6 (2019)
PMID: 31553909 DOI: 10.1016/j.celrep.2019.08.052

Abstact

Middle East respiratory syndrome coronavirus (MERS-CoV) emerged into the human population in 2012 and has caused substantial morbidity and mortality. Potently neutralizing antibodies targeting the receptor-binding domain (RBD) on MERS-CoV spike (S) protein have been characterized, but much less is known about antibodies targeting non-RBD epitopes. Here, we report the structural and functional characterization of G2, a neutralizing antibody targeting the MERS-CoV S1 N-terminal domain (S1-NTD). Structures of G2 alone and in complex with the MERS-CoV S1-NTD define a site of vulnerability comprising two loops, each of which contain a residue mutated in G2-escape variants. Cell-surface binding studies and in vitro competition experiments demonstrate that G2 strongly disrupts the attachment of MERS-CoV S to its receptor, dipeptidyl peptidase-4 (DPP4), with the inhibition requiring the native trimeric S conformation. These results advance our understanding of antibody-mediated neutralization of coronaviruses and should facilitate the development of immunotherapeutics and vaccines against MERS-CoV.

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Protein

Chemical

Disease

Primary Citation of related structures