6PY8 image
Deposition Date 2019-07-29
Release Date 2019-08-14
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6PY8
Title:
Crystal structure of the RBPJ-NOTCH1-NRARP ternary complex bound to DNA
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.75 Å
R-Value Free:
0.31
R-Value Work:
0.26
R-Value Observed:
0.27
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA
Chain IDs:C (auth: A), D (auth: X)
Chain Length:16
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Notch-regulated ankyrin repeat-containing protein
Gene (Uniprot):NRARP
Chain IDs:A (auth: B), B (auth: G)
Chain Length:114
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Recombining binding protein suppressor of hairless
Gene (Uniprot):RBPJ
Chain IDs:G (auth: C), H (auth: E)
Chain Length:444
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA
Chain IDs:E (auth: D), F (auth: Y)
Chain Length:16
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Neurogenic locus notch homolog protein 1
Gene (Uniprot):NOTCH1
Chain IDs:I (auth: F), J (auth: K)
Chain Length:369
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Extension of the Notch intracellular domain ankyrin repeat stack by NRARP promotes feedback inhibition of Notch signaling.
Sci.Signal. 12 ? ? (2019)
PMID: 31690634 DOI: 10.1126/scisignal.aay2369

Abstact

Canonical Notch signaling relies on regulated proteolysis of the receptor Notch to generate a nuclear effector that induces the transcription of Notch-responsive genes. In higher organisms, one Notch-responsive gene that is activated in many different cell types encodes the Notch-regulated ankyrin repeat protein (NRARP), which acts as a negative feedback regulator of Notch responses. Here, we showed that NRARP inhibited the growth of Notch-dependent T cell acute lymphoblastic leukemia (T-ALL) cell lines and bound directly to the core Notch transcriptional activation complex (NTC), requiring both the transcription factor RBPJ and the Notch intracellular domain (NICD), but not Mastermind-like proteins or DNA. The crystal structure of an NRARP-NICD1-RBPJ-DNA complex, determined to 3.75 Å resolution, revealed that the assembly of NRARP-NICD1-RBPJ complexes relied on simultaneous engagement of RBPJ and NICD1, with the three ankyrin repeats of NRARP extending the Notch1 ankyrin repeat stack. Mutations at the NRARP-NICD1 interface disrupted entry of the proteins into NTCs and abrogated feedback inhibition in Notch signaling assays in cultured cells. Forced expression of NRARP reduced the abundance of NICD in cells, suggesting that NRARP may promote the degradation of NICD. These studies establish the structural basis for NTC engagement by NRARP and provide insights into a critical negative feedback mechanism that regulates Notch signaling.

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Primary Citation of related structures