6PY0 image
Deposition Date 2019-07-28
Release Date 2019-08-28
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6PY0
Title:
Crystal Structure of mouse Serum Amyloid A3 (SAA3) bound with Retinol
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serum amyloid A-3 protein
Gene (Uniprot):Saa3
Chain IDs:A, B, C
Chain Length:104
Number of Molecules:3
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Molecular basis for retinol binding by serum amyloid A during infection.
Proc.Natl.Acad.Sci.USA 116 19077 19082 (2019)
PMID: 31484771 DOI: 10.1073/pnas.1910713116

Abstact

Serum amyloid A (SAA) proteins are strongly induced in the liver by systemic infection and in the intestine by bacterial colonization. In infected mice, SAA proteins circulate in association with the vitamin A derivative retinol, suggesting that SAAs transport retinol during infection. Here we illuminate a structural basis for the retinol-SAA interaction. In the bloodstream of infected mice, most SAA is complexed with high-density lipoprotein (HDL). However, we found that the majority of the circulating retinol was associated with the small fraction of SAA proteins that circulate without binding to HDL, thus identifying free SAA as the predominant retinol-binding form in vivo. We then determined the crystal structure of retinol-bound mouse SAA3 at a resolution of 2.2 Å. Retinol-bound SAA3 formed a novel asymmetric trimeric assembly that was generated by the hydrophobic packing of the conserved amphipathic helices α1 and α3. This hydrophobic packing created a retinol-binding pocket in the center of the trimer, which was confirmed by mutagenesis studies. Together, these findings illuminate the molecular basis for retinol transport by SAA proteins during infection.

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