6PXE image
Entry Detail
PDB ID:
6PXE
Keywords:
Title:
Crystal structure of the complex between periplasmic domains of antiholin RI and holin T from T4 phage, in P21
Biological Source:
PDB Version:
Deposition Date:
2019-07-25
Release Date:
2020-06-24
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Antiholin
Chain IDs:A (auth: R), C (auth: A), E (auth: C), G (auth: E)
Chain Length:74
Number of Molecules:4
Biological Source:Enterobacteria phage T4
Polymer Type:polypeptide(L)
Description:Holin
Chain IDs:B (auth: T), D (auth: B), F (auth: D), H (auth: F)
Chain Length:164
Number of Molecules:4
Biological Source:Escherichia phage vB_EcoM_NBG2
Primary Citation
The Structural Basis of T4 Phage Lysis Control: DNA as the Signal for Lysis Inhibition.
J.Mol.Biol. 432 4623 4636 (2020)
PMID: 32562709 DOI: 10.1016/j.jmb.2020.06.013

Abstact

Optimal phage propagation depends on the regulation of the lysis of the infected host cell. In T4 phage infection, lysis occurs when the holin protein (T) forms lesions in the host membrane. However, the lethal function of T can be blocked by an antiholin (RI) during lysis inhibition (LIN). LIN sets if the infected cell undergoes superinfection, then the lysis is delayed until host/phage ratio becomes more favorable for the release of progeny. It has been thought that a signal derived from the superinfection is required to activate RI. Here we report structures that suggest a radically different model in which RI binds to T irrespective of superinfection, causing it to accumulate in a membrane as heterotetrameric 2RI-2T complex. Moreover, we show the complex binds non-specifically to DNA, suggesting that the gDNA from the superinfecting phage serves as the LIN signal and that stabilization of the complex by DNA binding is what defines LIN. Finally, we show that soluble domain of free RI crystallizes in a domain-swapped homotetramer, which likely works as a sink for RI molecules released from the RI-T complex to ensure efficient lysis. These results constitute the first structural basis and a new model not only for the historic LIN phenomenon but also for the temporal regulation of phage lysis in general.

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