6PX2 image
Deposition Date 2019-07-24
Release Date 2019-12-25
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6PX2
Keywords:
Title:
Acropora millepora GAPDH
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glyceraldehyde-3-phosphate dehydrogenase
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:355
Number of Molecules:8
Biological Source:Acropora millepora
Primary Citation
Thermal stability and structure of glyceraldehyde-3-phosphate dehydrogenase from the coral Acropora millepora.
Rsc Adv 11 10364 10374 (2021)
PMID: 35423531 DOI: 10.1039/d0ra10119b

Abstact

Corals are vulnerable to increasing ocean temperatures. It is known that elevated temperatures lead to the breakdown of an essential mutualistic relationship with photosynthetic algae. The molecular mechanisms of this temperature-dependent loss of symbiosis are less well understood. Here, the thermal stability of a critical metabolic enzyme, glyceraldehyde-3-phosphate dehydrogenase, from the stony coral Acropora millepora was found to increase significantly in the presence of its cofactor NAD+. Determination of the structure of the cofactor-enzyme complex (PDB ID 6PX2) revealed variable NAD+ occupancy across the four monomers of the tetrameric enzyme. The structure of the fully occupied monomers was compared to those with partial cofactor occupancy, identifying regions of difference that may account for the increased thermal stability.

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