ISDA

Deposition Date 2019-07-22

Release Date 2020-03-25

Last Version Date 2024-03-20

Entry Detail

PDB ID:

6PWB

Keywords:

STRUCTURAL PROTEIN

Title:

Rigid body fitting of flagellin FlaB, and flagellar coiling proteins, FcpA and FcpB, into a 10 Angstrom structure of the asymmetric flagellar filament purified from Leptospira biflexa Patoc WT cells resolved via subtomogram averaging

Biological Source:

Source Organism:

Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) (Taxon ID: 456481)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

9.83 Å

Aggregation State:

FILAMENT

Reconstruction Method:

SUBTOMOGRAM AVERAGING

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Flagellin B1 (FlaB1)
Gene (Uniprot):flaB2
Chain IDs:A (auth: AG), B (auth: AH), C (auth: AI), G (auth: AR), I (auth: BA), J (auth: BB), K (auth: BC), L (auth: BD), T (auth: BL), U (auth: BM), EA (auth: CG), FA (auth: CH), JA (auth: BS), KA (auth: BT), LA (auth: BU), MA (auth: BV), NA (auth: BW), OA (auth: BX), PA (auth: BY), SA (auth: DB), TA (auth: DC), XA (auth: CL), YA (auth: CM), ZA (auth: CN), AB (auth: CO), BB (auth: CP), CB (auth: CQ), DB (auth: CR), EB (auth: CS), FB (auth: CT), NB (auth: DG), OB (auth: DH), PB (auth: DI), QB (auth: DJ), RB (auth: DK), SB (auth: DL), TB (auth: DM), UB (auth: DN), VB (auth: DO), DC (auth: DW), EC (auth: DX), HC (auth: EB), IC (auth: EC), JC (auth: ED), KC (auth: EE), LC (auth: EF), MC (auth: EG), NC (auth: EH), OC (auth: EI), PC (auth: EJ), XC (auth: ER), YC (auth: ES), CD (auth: FA), DD (auth: FB), ED (auth: FC), FD, GD (auth: FE), OD (auth: FM), PD (auth: FN), TD (auth: EW), UD (auth: EX), VD (auth: EY), WD (auth: EZ), DE (auth: GH), EE (auth: GI), IE (auth: FR), JE (auth: FS), KE (auth: FT), LE (auth: FU), ME (auth: FV), NE (auth: FW), OE (auth: FX), QE (auth: HC), TE (auth: GM), UE (auth: GN), VE (auth: GO), WE (auth: GP), XE (auth: GQ), YE (auth: GR), CF (auth: HH), DF (auth: HI), EF (auth: HJ), FF (auth: HK), GF (auth: HL)
Chain Length:265
Number of Molecules:84
Biological Source:Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)

UniProt ID:B0SSZ5 Pfam ID:PF00669, PF00700

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Flagellar coiling protein A (FcpA)
Gene (Uniprot):LEPBI_I0267
Chain IDs:D (auth: AL), E (auth: AM), H (auth: AU), M (auth: BE), N (auth: BF), O (auth: BG), P (auth: BH), V (auth: BN), X (auth: BP), Y (auth: CA), Z (auth: CB), AA (auth: CC), GA (auth: CI), IA (auth: CK), QA (auth: BZ), UA (auth: DD), WA (auth: DF), GB (auth: CU), HB (auth: CV), IB (auth: CW), JB (auth: CX), MB (auth: EA), WB (auth: DP), XB (auth: DQ), YB (auth: DR), ZB (auth: DS), FC (auth: DY), QC (auth: EK), RC (auth: EL), SC (auth: EM), TC (auth: EN), ZC (auth: ET), BD (auth: EV), HD (auth: FF), ID (auth: FG), JD (auth: FH), KD (auth: FI), QD (auth: FO), SD (auth: FQ), XD (auth: GA), YD (auth: GB), ZD (auth: GC), FE (auth: GJ), HE (auth: GL), RE (auth: HE), ZE (auth: GV), AF (auth: GW)
Chain Length:237
Number of Molecules:47
Biological Source:Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)

UniProt ID:B0STJ8

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Flagellar coiling protein B (FcpB)
Gene (Uniprot):LEPBI_I1597
Chain IDs:F (auth: AO), Q (auth: BI), R (auth: BJ), S (auth: BK), W (auth: BO), BA (auth: CD), CA (auth: CE), DA (auth: CF), HA (auth: CJ), RA (auth: DA), VA (auth: DE), KB (auth: CY), LB (auth: CZ), AC (auth: DT), BC (auth: DU), CC (auth: DV), GC (auth: DZ), UC (auth: EO), VC (auth: EP), WC (auth: EQ), AD (auth: EU), LD (auth: FJ), MD (auth: FK), ND (auth: FL), RD (auth: FP), AE (auth: GE), BE (auth: GF), CE (auth: GG), GE (auth: GK), PE (auth: HB), SE (auth: HF), BF (auth: GZ)
Chain Length:221
Number of Molecules:32
Biological Source:Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)

UniProt ID:B0SR03

Ligand Molecules

Primary Citation

An asymmetric sheath controls flagellar supercoiling and motility in the leptospira spirochete.

Gibson, K.H, Trajtenberg, F, Wunder, E.A, Brady, M.R, San Martin, F, Mechaly, A, Shang, Z, Liu, J, Picardeau, M, Ko, A, Buschiazzo, A, Sindelar, C.V, San Martin, F, Mechaly, A.E, Larrieux, N, Wunder, E.A, Ko, A.I, Picardeau, M, Trajtenberg, F, Buschiazzo, A, Wunder, E.A, Figueira, C.P, Benaroudj, N, Hu, B, Tong, B.A, Trajtenberg, F, Liu, J, Reis, M.G, Charon, N.W, Buschiazzo, A, Picardeau, M, Ko, A.I, Wunder, E.A, Slamti, L, Suwondo, D.N, Gibson, K.H, Shang, Z, Sindelar, C.V, Trajtenberg, F, Buschiazzo, A, Ko, A.I, Picardeau, M.Show

Elife 9 ? ? (2020)

PMID: 32157997 DOI: 10.7554/eLife.53672

Abstact

Spirochete bacteria, including important pathogens, exhibit a distinctive means of swimming via undulations of the entire cell. Motility is powered by the rotation of supercoiled 'endoflagella' that wrap around the cell body, confined within the periplasmic space. To investigate the structural basis of flagellar supercoiling, which is critical for motility, we determined the structure of native flagellar filaments from the spirochete Leptospira by integrating high-resolution cryo-electron tomography and X-ray crystallography. We show that these filaments are coated by a highly asymmetric, multi-component sheath layer, contrasting with flagellin-only homopolymers previously observed in exoflagellated bacteria. Distinct sheath proteins localize to the filament inner and outer curvatures to define the supercoiling geometry, explaining a key functional attribute of this spirochete flagellum.

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