6PVJ image
Deposition Date 2019-07-20
Release Date 2020-01-22
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6PVJ
Title:
Crystal structure of PhqK in complex with malbrancheamide C
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.25 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:FAD monooxygenase
Gene (Uniprot):phqK
Chain IDs:A
Chain Length:459
Number of Molecules:1
Biological Source:Penicillium fellutanum
Primary Citation
Molecular Basis for Spirocycle Formation in the Paraherquamide Biosynthetic Pathway.
J.Am.Chem.Soc. 142 2244 2252 (2020)
PMID: 31904957 DOI: 10.1021/jacs.9b09070

Abstact

The paraherquamides are potent anthelmintic natural products with complex heptacyclic scaffolds. One key feature of these molecules is the spiro-oxindole moiety that lends a strained three-dimensional architecture to these structures. The flavin monooxygenase PhqK was found to catalyze spirocycle formation through two parallel pathways in the biosynthesis of paraherquamides A and G. Two new paraherquamides (K and L) were isolated from a ΔphqK strain of Penicillium simplicissimum, and subsequent enzymatic reactions with these compounds generated two additional metabolites, paraherquamides M and N. Crystal structures of PhqK in complex with various substrates provided a foundation for mechanistic analyses and computational studies. While it is evident that PhqK can react with various substrates, reaction kinetics and molecular dynamics simulations indicated that the dioxepin-containing paraherquamide L is the favored substrate. Through this effort, we have elucidated a key step in the biosynthesis of the paraherquamides and provided a rationale for the selective spirocyclization of these powerful anthelmintic agents.

Legend

Protein

Chemical

Disease

Primary Citation of related structures