6PT2 image
Deposition Date 2019-07-14
Release Date 2019-12-11
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6PT2
Title:
Crystal structure of the active delta opioid receptor in complex with the peptide agonist KGCHM07
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Delta opioid receptor
Chain IDs:A, B
Chain Length:454
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Peptide agonist KGCHM07
Chain IDs:C, D
Chain Length:5
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
Elucidating the active delta-opioid receptor crystal structure with peptide and small-molecule agonists.
Sci Adv 5 eaax9115 eaax9115 (2019)
PMID: 31807708 DOI: 10.1126/sciadv.aax9115

Abstact

Selective activation of the δ-opioid receptor (DOP) has great potential for the treatment of chronic pain, benefitting from ancillary anxiolytic and antidepressant-like effects. Moreover, DOP agonists show reduced adverse effects as compared to μ-opioid receptor (MOP) agonists that are in the spotlight of the current "opioid crisis." Here, we report the first crystal structures of the DOP in an activated state, in complex with two relevant and structurally diverse agonists: the potent opioid agonist peptide KGCHM07 and the small-molecule agonist DPI-287 at 2.8 and 3.3 Å resolution, respectively. Our study identifies key determinants for agonist recognition, receptor activation, and DOP selectivity, revealing crucial differences between both agonist scaffolds. Our findings provide the first investigation into atomic-scale agonist binding at the DOP, supported by site-directed mutagenesis and pharmacological characterization. These structures will underpin the future structure-based development of DOP agonists for an improved pain treatment with fewer adverse effects.

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Primary Citation of related structures