6PSD image
Deposition Date 2019-07-12
Release Date 2020-07-15
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6PSD
Keywords:
Title:
Complex of CRACR2a with a Dynein Light Intermediate Chain Peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.66 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:EF-hand calcium-binding domain-containing protein 4B
Gene (Uniprot):CRACR2A
Chain IDs:A (auth: E), B (auth: C), C (auth: A), D (auth: G), E (auth: I), F (auth: K), G (auth: M), H (auth: O)
Chain Length:76
Number of Molecules:8
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:cDNA FLJ10219 fis, clone HEMBA1007018, highly similar to Cytoplasmic dynein 1 light intermediate chain 1
Chain IDs:I (auth: F), J (auth: D), K (auth: B), L (auth: H), M (auth: J), N (auth: L), O (auth: N), P
Chain Length:25
Number of Molecules:8
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A tunable LIC1-adaptor interaction modulates dynein activity in a cargo-specific manner.
Nat Commun 11 5695 5695 (2020)
PMID: 33173051 DOI: 10.1038/s41467-020-19538-7

Abstact

Cytoplasmic dynein-1 (dynein) is the motor responsible for most retrograde transport of cargoes along microtubules in eukaryotic cells, including organelles, mRNA and viruses. Cargo selectivity and activation of processive motility depend on a group of so-called "activating adaptors" that link dynein to its general cofactor, dynactin, and cargoes. The mechanism by which these adaptors regulate dynein transport is poorly understood. Here, based on crystal structures, quantitative binding studies, and in vitro motility assays, we show that BICD2, CRACR2a, and HOOK3, representing three subfamilies of unrelated adaptors, interact with the same amphipathic helix of the dynein light intermediate chain-1 (LIC1). While the hydrophobic character of the interaction is conserved, the three adaptor subfamilies use different folds (coiled-coil, EF-hand, HOOK domain) and different surface contacts to bind the LIC1 helix with affinities ranging from 1.5 to 15.0 μM. We propose that a tunable LIC1-adaptor interaction modulates dynein's motility in a cargo-specific manner.

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Disease

Primary Citation of related structures