6PMC image
Deposition Date 2019-07-01
Release Date 2020-02-26
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6PMC
Keywords:
Title:
TRK-A IN COMPLEX WITH LIGAND 1a
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.19 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 31 1 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:High affinity nerve growth factor receptor
Gene (Uniprot):NTRK1
Chain IDs:A
Chain Length:311
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP A SER modified residue
Ligand Molecules
Primary Citation
Synthetic inhibitor leads of human tropomyosin receptor kinase A ( h TrkA).
Rsc Med Chem 11 370 377 (2020)
PMID: 33479642 DOI: 10.1039/c9md00554d

Abstact

In silico virtual screening followed by in vitro biochemical, biophysical, and cellular screening resulted in the identification of distinctly different hTrkA kinase domain inhibitor scaffolds. X-ray structural analysis of representative inhibitors bound to hTrkA kinase domain defined the binding mode and rationalized the mechanism of action. Preliminary assessment of the sub-type selectivity against the closest hTrkB isoform, and early ADME guided the progression of select inhibitor leads in the screening cascade. The possibility of the actives sustaining to known hTrkA resistance mutations assessed in silico offers initial guidance into the required multiparametric lead optimization to arrive at a clinical candidate.

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Disease

Primary Citation of related structures