6PM9 image
Deposition Date 2019-07-01
Release Date 2019-09-18
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6PM9
Keywords:
Title:
Crystal structure of the core catalytic domain of human O-GlcNAcase bound to MK-8719
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.86 Å
R-Value Free:
0.30
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:O-GlcNAcase TIM-barrel domain
Gene (Uniprot):OGA
Chain IDs:A, B, C, D
Chain Length:388
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:O-GlcNAcase stalk domain
Gene (Uniprot):OGA
Chain IDs:E, F, G, H
Chain Length:161
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Discovery of MK-8719, a Potent O-GlcNAcase Inhibitor as a Potential Treatment for Tauopathies.
J.Med.Chem. 62 10062 10097 (2019)
PMID: 31487175 DOI: 10.1021/acs.jmedchem.9b01090

Abstact

Inhibition of O-GlcNAcase (OGA) has emerged as a promising therapeutic approach to treat tau pathology in neurodegenerative diseases such as Alzheimer's disease and progressive supranuclear palsy. Beginning with carbohydrate-based lead molecules, we pursued an optimization strategy of reducing polar surface area to align the desired drug-like properties of potency, selectivity, high central nervous system (CNS) exposure, metabolic stability, favorable pharmacokinetics, and robust in vivo pharmacodynamic response. Herein, we describe the medicinal chemistry and pharmacological studies that led to the identification of (3aR,5S,6S,7R,7aR)-5-(difluoromethyl)-2-(ethylamino)-3a,6,7,7a-tetrahydro-5H-pyrano[3,2-d]thiazole-6,7-diol 42 (MK-8719), a highly potent and selective OGA inhibitor with excellent CNS penetration that has been advanced to first-in-human phase I clinical trials.

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Primary Citation of related structures