6PLM image
Entry Detail
PDB ID:
6PLM
Keywords:
Title:
Legionella pneumophila SidJ/ Calmodulin 2 complex
Biological Source:
PDB Version:
Deposition Date:
2019-07-01
Release Date:
2019-11-20
Method Details:
Experimental Method:
Resolution:
2.59 Å
R-Value Free:
0.24
R-Value Work:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:SidJ protein
Chain IDs:A, B
Chain Length:757
Number of Molecules:2
Biological Source:Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Polymer Type:polypeptide(L)
Description:Calmodulin-2
Chain IDs:C, D
Chain Length:147
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Protein polyglutamylation catalyzed by the bacterial calmodulin-dependent pseudokinase SidJ.
Elife 8 ? ? (2019)
PMID: 31682223 DOI: 10.7554/eLife.51162

Abstact

Pseudokinases are considered to be the inactive counterparts of conventional protein kinases and comprise approximately 10% of the human and mouse kinomes. Here, we report the crystal structure of the Legionella pneumophila effector protein, SidJ, in complex with the eukaryotic Ca2+-binding regulator, calmodulin (CaM). The structure reveals that SidJ contains a protein kinase-like fold domain, which retains a majority of the characteristic kinase catalytic motifs. However, SidJ fails to demonstrate kinase activity. Instead, mass spectrometry and in vitro biochemical analyses demonstrate that SidJ modifies another Legionella effector SdeA, an unconventional phosphoribosyl ubiquitin ligase, by adding glutamate molecules to a specific residue of SdeA in a CaM-dependent manner. Furthermore, we show that SidJ-mediated polyglutamylation suppresses the ADP-ribosylation activity. Our work further implies that some pseudokinases may possess ATP-dependent activities other than conventional phosphorylation.

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Primary Citation of related structures