6PLK image
Entry Detail
PDB ID:
6PLK
Title:
Crystal structure of ZIKV-116 Fab in complex with ZIKV envelope DIII
Biological Source:
PDB Version:
Deposition Date:
2019-07-01
Release Date:
2019-11-20
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Env
Chain IDs:C (auth: E), F
Chain Length:110
Number of Molecules:2
Biological Source:Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Polymer Type:polypeptide(L)
Description:ZIKV-116 heavy chain
Chain IDs:A (auth: H), D (auth: I)
Chain Length:225
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ZIKV-116 light chain
Chain IDs:B (auth: L), E (auth: M)
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Mechanism of differential Zika and dengue virus neutralization by a public antibody lineage targeting the DIII lateral ridge.
J.Exp.Med. 217 ? ? (2020)
PMID: 31757867 DOI: 10.1084/jem.20191792

Abstact

We previously generated a panel of human monoclonal antibodies (mAbs) against Zika virus (ZIKV) and identified one, ZIKV-116, that shares germline usage with mAbs identified in multiple donors. Here we show that ZIKV-116 interferes with ZIKV infection at a post-cellular attachment step by blocking viral fusion with host membranes. ZIKV-116 recognizes the lateral ridge of envelope protein domain III, with one critical residue varying between the Asian and African strains responsible for differential binding affinity and neutralization potency (E393D). ZIKV-116 also binds to and cross-neutralizes some dengue virus serotype 1 (DENV1) strains, with genotype-dependent inhibition explained by variation in a domain II residue (R204K) that potentially modulates exposure of the distally located, partially cryptic epitope. The V-J reverted germline configuration of ZIKV-116 preferentially binds to and neutralizes an Asian ZIKV strain, suggesting that this epitope may optimally induce related B cell clonotypes. Overall, these studies provide a structural and molecular mechanism for a cross-reactive mAb that uniquely neutralizes ZIKV and DENV1.

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