6PI5 image
Deposition Date 2019-06-26
Release Date 2019-11-13
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6PI5
Title:
The evolving story of AtzT, a periplasmic binding protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.67 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Atrazine periplasmic binding protein
Gene (Uniprot):orf97
Chain IDs:A, B, C, D
Chain Length:355
Number of Molecules:4
Biological Source:Pseudomonas sp. (strain ADP)
Primary Citation
The evolving story of AtzT, a periplasmic binding protein.
Acta Crystallogr D Struct Biol 75 995 1002 (2019)
PMID: 31692473 DOI: 10.1107/S2059798319013883

Abstact

Atrazine is an s-triazine-based herbicide that is used in many countries around the world in many millions of tons per year. A small number of organisms, such as Pseudomonas sp. strain ADP, have evolved to use this modified s-triazine as a food source, and the various genes required to metabolize atrazine can be found on a single plasmid. The atomic structures of seven of the eight proteins involved in the breakdown of atrazine by Pseudomonas sp. strain ADP have been determined by X-ray crystallography, but the structures of the proteins required by the cell to import atrazine for use as an energy source are still lacking. The structure of AtzT, a periplasmic binding protein that may be involved in the transport of a derivative of atrazine, 2-hydroxyatrazine, into the cell for mineralization, has now been determined. The structure was determined by SAD phasing using an ethylmercury phosphate derivative that diffracted X-rays to beyond 1.9 Å resolution. `Native' (guanine-bound) and 2-hydroxyatrazine-bound structures were also determined to high resolution (1.67 and 1.65 Å, respectively), showing that 2-hydroxyatrazine binds in a similar way to the purportedly native ligand. Structural similarities led to the belief that it may be possible to evolve AtzT from a purine-binding protein to a protein that can bind and detect atrazine in the environment.

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Primary Citation of related structures