6PGK image
Deposition Date 2019-06-24
Release Date 2019-11-27
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6PGK
Keywords:
Title:
Membrane Protein Megahertz Crystallography at the European XFEL, Photosystem I XFEL at 2.9 A
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.33
R-Value Work:
0.29
R-Value Observed:
0.30
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:A, G, Y
Chain Length:81
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:B, H, Z
Chain Length:741
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:C, N, AA (auth: a)
Chain Length:81
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II
Gene (Uniprot):psaD
Chain IDs:D, O, BA (auth: b)
Chain Length:741
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV
Gene (Uniprot):psaE
Chain IDs:E, P, CA (auth: c)
Chain Length:76
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III
Gene (Uniprot):psaF
Chain IDs:F, Q, DA (auth: d)
Chain Length:164
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:I, R, EA (auth: e)
Chain Length:76
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:J, S, FA (auth: f)
Chain Length:164
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit PsaK
Gene (Uniprot):psaK
Chain IDs:K, T, GA (auth: g)
Chain Length:83
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XI
Gene (Uniprot):psaL
Chain IDs:L, U, HA (auth: h)
Chain Length:741
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Gene (Uniprot):psaM
Chain IDs:M, V, IA (auth: i)
Chain Length:38
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I 4.8K protein
Gene (Uniprot):tsr0813
Chain IDs:W, X, JA (auth: j)
Chain Length:39
Number of Molecules:3
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Primary Citation

Abstact

The world's first superconducting megahertz repetition rate hard X-ray free-electron laser (XFEL), the European XFEL, began operation in 2017, featuring a unique pulse train structure with 886 ns between pulses. With its rapid pulse rate, the European XFEL may alleviate some of the increasing demand for XFEL beamtime, particularly for membrane protein serial femtosecond crystallography (SFX), leveraging orders-of-magnitude faster data collection. Here, we report the first membrane protein megahertz SFX experiment, where we determined a 2.9 Å-resolution SFX structure of the large membrane protein complex, Photosystem I, a > 1 MDa complex containing 36 protein subunits and 381 cofactors. We address challenges to megahertz SFX for membrane protein complexes, including growth of large quantities of crystals and the large molecular and unit cell size that influence data collection and analysis. The results imply that megahertz crystallography could have an important impact on structure determination of large protein complexes with XFELs.

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Primary Citation of related structures