6PFO image
Deposition Date 2019-06-21
Release Date 2020-02-12
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6PFO
Title:
Crystal structure of N-glycosylated human calcitonin receptor extracellular domain in complex with salmon calcitonin (16-32)
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Homo sapiens (Taxon ID: 9606)
Oncorhynchus sp. (Taxon ID: 8025)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.78 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Maltodextrin-binding protein,Calcitonin receptor
Gene (Uniprot):CALCR
Chain IDs:A, B
Chain Length:484
Number of Molecules:2
Biological Source:Escherichia coli, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Calcitonin
Gene (Uniprot):CGRP
Chain IDs:C, D
Chain Length:18
Number of Molecules:2
Biological Source:Oncorhynchus sp.
Peptide-like Molecules
PRD_900001
Primary Citation
Calcitonin Receptor N-Glycosylation Enhances Peptide Hormone Affinity by Controlling Receptor Dynamics.
J.Mol.Biol. 432 1996 2014 (2020)
PMID: 32035902 DOI: 10.1016/j.jmb.2020.01.028

Abstact

The class B G protein-coupled receptor (GPCR) calcitonin receptor (CTR) is a drug target for osteoporosis and diabetes. N-glycosylation of asparagine 130 in its extracellular domain (ECD) enhances calcitonin hormone affinity with the proximal GlcNAc residue mediating this effect through an unknown mechanism. Here, we present two crystal structures of salmon calcitonin-bound, GlcNAc-bearing CTR ECD at 1.78 and 2.85 Å resolutions and analyze the mechanism of the glycan effect. The N130 GlcNAc does not contact the hormone. Surprisingly, the structures are nearly identical to a structure of hormone-bound, N-glycan-free ECD, which suggested that the GlcNAc might affect CTR dynamics not observed in the static crystallographic snapshots. Hydrogen-deuterium exchange mass spectrometry and molecular dynamics simulations revealed that glycosylation stabilized a β-sheet adjacent to the N130 GlcNAc and the N-terminal α-helix near the peptide-binding site while increasing flexibility of the peptide-binding site turret loop. These changes due to N-glycosylation increased the ligand on-rate and decreased its off-rate. The glycan effect extended to RAMP-CTR amylin receptor complexes and was also conserved in the related CGRP receptor. These results reveal that N-glycosylation can modulate GPCR function by altering receptor dynamics.

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Primary Citation of related structures