6PDT image
Deposition Date 2019-06-19
Release Date 2020-03-11
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6PDT
Keywords:
Title:
cryoEM structure of yeast glucokinase filament
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glucokinase-1
Gene (Uniprot):GLK1
Chain IDs:A, B, C, D
Chain Length:500
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Primary Citation
Polymerization in the actin ATPase clan regulates hexokinase activity in yeast.
Science 367 1039 1042 (2020)
PMID: 32108112 DOI: 10.1126/science.aay5359

Abstact

The actin fold is found in cytoskeletal polymers, chaperones, and various metabolic enzymes. Many actin-fold proteins, such as the carbohydrate kinases, do not polymerize. We found that Glk1, a Saccharomyces cerevisiae glucokinase, forms two-stranded filaments with ultrastructure that is distinct from that of cytoskeletal polymers. In cells, Glk1 polymerized upon sugar addition and depolymerized upon sugar withdrawal. Polymerization inhibits enzymatic activity; the Glk1 monomer-polymer equilibrium sets a maximum rate of glucose phosphorylation regardless of Glk1 concentration. A mutation that eliminated Glk1 polymerization alleviated concentration-dependent enzyme inhibition. Yeast containing nonpolymerizing Glk1 were less fit when growing on sugars and more likely to die when refed glucose. Glk1 polymerization arose independently from other actin-related filaments and may allow yeast to rapidly modulate glucokinase activity as nutrient availability changes.

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