6PDH image
Entry Detail
PDB ID:
6PDH
Title:
Crystal Structure of EcDsbA in a complex with purified pyrazole 9
Biological Source:
PDB Version:
Deposition Date:
2019-06-19
Release Date:
2020-05-06
Method Details:
Experimental Method:
Resolution:
1.96 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Thiol:disulfide interchange protein DsbA
Chain IDs:A, B
Chain Length:189
Number of Molecules:2
Biological Source:Escherichia coli (strain K12)
Primary Citation
Rapid Elaboration of Fragments into Leads by X-ray Crystallographic Screening of Parallel Chemical Libraries (REFiL X ).
J.Med.Chem. 63 6863 6875 (2020)
PMID: 32529824 DOI: 10.1021/acs.jmedchem.0c00111

Abstact

A bottleneck in fragment-based lead development is the lack of systematic approaches to elaborate the initial fragment hits, which usually bind with low affinity to their target. Herein, we describe an analysis using X-ray crystallography of a diverse library of compounds prepared using microscale parallel synthesis. This approach yielded an 8-fold increase in affinity and detailed structural information for the resulting complex, providing an efficient and broadly applicable approach to early fragment development.

Legend

Protein

Chemical

Disease

Primary Citation of related structures