6PBE image
Deposition Date 2019-06-13
Release Date 2019-11-06
Last Version Date 2024-03-20
Entry Detail
PDB ID:
6PBE
Title:
ZINC17988990-bound TRPV5 in nanodiscs
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.78 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transient receptor potential cation channel subfamily V member 5
Gene (Uniprot):Trpv5
Chain IDs:A, B, C, D
Chain Length:730
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Ligand Molecules
Primary Citation
Structure-based characterization of novel TRPV5 inhibitors.
Elife 8 ? ? (2019)
PMID: 31647410 DOI: 10.7554/eLife.49572

Abstact

Transient receptor potential vanilloid 5 (TRPV5) is a highly calcium selective ion channel that acts as the rate-limiting step of calcium reabsorption in the kidney. The lack of potent, specific modulators of TRPV5 has limited the ability to probe the contribution of TRPV5 in disease phenotypes such as hypercalcemia and nephrolithiasis. Here, we performed structure-based virtual screening (SBVS) at a previously identified TRPV5 inhibitor binding site coupled with electrophysiology screening and identified three novel inhibitors of TRPV5, one of which exhibits high affinity, and specificity for TRPV5 over other TRP channels, including its close homologue TRPV6. Cryo-electron microscopy of TRPV5 in the presence of the specific inhibitor and its parent compound revealed novel binding sites for this channel. Structural and functional analysis have allowed us to suggest a mechanism of action for the selective inhibition of TRPV5 and lay the groundwork for rational design of new classes of TRPV5 modulators.

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Disease

Primary Citation of related structures