6PAV image
Entry Detail
PDB ID:
6PAV
Keywords:
Title:
Structure of Human NMT1 with products CoA and myristoyl-lysine peptide with acetylated N-terminus
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-06-12
Release Date:
2020-03-11
Method Details:
Experimental Method:
Resolution:
2.52 Å
R-Value Free:
0.28
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glycylpeptide N-tetradecanoyltransferase 1
Chain IDs:A (auth: B), C (auth: A)
Chain Length:388
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ARF6 peptide
Chain IDs:D (auth: C)
Chain Length:8
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:acetyl-Arf6 peptide
Chain IDs:B (auth: D)
Chain Length:8
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
NMT1 and NMT2 are lysine myristoyltransferases regulating the ARF6 GTPase cycle.
Nat Commun 11 1067 1067 (2020)
PMID: 32103017 DOI: 10.1038/s41467-020-14893-x

Abstact

Lysine fatty acylation in mammalian cells was discovered nearly three decades ago, yet the enzymes catalyzing it remain unknown. Unexpectedly, we find that human N-terminal glycine myristoyltransferases (NMT) 1 and 2 can efficiently myristoylate specific lysine residues. They modify ADP-ribosylation factor 6 (ARF6) on lysine 3 allowing it to remain on membranes during the GTPase cycle. We demonstrate that the NAD+-dependent deacylase SIRT2 removes the myristoyl group, and our evidence suggests that NMT prefers the GTP-bound while SIRT2 prefers the GDP-bound ARF6. This allows the lysine myrisotylation-demyristoylation cycle to couple to and promote the GTPase cycle of ARF6. Our study provides an explanation for the puzzling dissimilarity of ARF6 to other ARFs and suggests the existence of other substrates regulated by this previously unknown function of NMT. Furthermore, we identified a NMT/SIRT2-ARF6 regulatory axis, which may offer new ways to treat human diseases.

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