6P7Q image
Deposition Date 2019-06-06
Release Date 2019-12-25
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6P7Q
Title:
Structure of E. coli MS115-1 NucC, 5'-pApA bound form
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.66 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E. coli MS115-1 NucC
Gene (Uniprot):nucC
Mutations:D73N
Chain IDs:A, B, C
Chain Length:243
Number of Molecules:3
Biological Source:Escherichia coli MS 115-1
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*AP*A)-3')
Chain IDs:D, E, F
Chain Length:2
Number of Molecules:3
Biological Source:Escherichia coli MS 115-1
Ligand Molecules
Primary Citation
Structure and Mechanism of a Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity.
Mol.Cell 77 723 ? (2020)
PMID: 31932164 DOI: 10.1016/j.molcel.2019.12.010

Abstact

Bacteria possess an array of defenses against foreign invaders, including a broadly distributed bacteriophage defense system termed CBASS (cyclic oligonucleotide-based anti-phage signaling system). In CBASS systems, a cGAS/DncV-like nucleotidyltransferase synthesizes cyclic di- or tri-nucleotide second messengers in response to infection, and these molecules activate diverse effectors to mediate bacteriophage immunity via abortive infection. Here, we show that the CBASS effector NucC is related to restriction enzymes but uniquely assembles into a homotrimer. Binding of NucC trimers to a cyclic tri-adenylate second messenger promotes assembly of a NucC homohexamer competent for non-specific double-strand DNA cleavage. In infected cells, NucC activation leads to complete destruction of the bacterial chromosome, causing cell death prior to completion of phage replication. In addition to CBASS systems, we identify NucC homologs in over 30 type III CRISPR/Cas systems, where they likely function as accessory nucleases activated by cyclic oligoadenylate second messengers synthesized by these systems' effector complexes.

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Primary Citation of related structures