6P7C image
Deposition Date 2019-06-05
Release Date 2020-02-26
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6P7C
Keywords:
Title:
D104A/S128A S. typhimurium siroheme synthase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.76 Å
R-Value Free:
0.28
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Siroheme synthase
Mutations:S128A, D104A
Chain IDs:A, B
Chain Length:457
Number of Molecules:2
Biological Source:Salmonella typhimurium
Primary Citation
Siroheme synthase orients substrates for dehydrogenase and chelatase activities in a common active site.
Nat Commun 11 864 864 (2020)
PMID: 32054833 DOI: 10.1038/s41467-020-14722-1

Abstact

Siroheme is the central cofactor in a conserved class of sulfite and nitrite reductases that catalyze the six-electron reduction of sulfite to sulfide and nitrite to ammonia. In Salmonella enterica serovar Typhimurium, siroheme is produced by a trifunctional enzyme, siroheme synthase (CysG). A bifunctional active site that is distinct from its methyltransferase activity catalyzes the final two steps, NAD+-dependent dehydrogenation and iron chelation. How this active site performs such different chemistries is unknown. Here, we report the structures of CysG bound to precorrin-2, the initial substrate; sirohydrochlorin, the dehydrogenation product/chelation substrate; and a cobalt-sirohydrochlorin product. We identified binding poses for all three tetrapyrroles and tested the roles of specific amino acids in both activities to give insights into how a bifunctional active site catalyzes two different chemistries and acts as an iron-specific chelatase in the final step of siroheme synthesis.

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Primary Citation of related structures