6P59 image
Deposition Date 2019-05-29
Release Date 2019-12-25
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6P59
Title:
Crystal structure of SIVrcm Vif-CBFbeta-ELOB-ELOC complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.94 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Core-binding factor subunit beta
Gene (Uniprot):CBFB
Chain IDs:A (auth: C), E (auth: A)
Chain Length:165
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Virion infectivity factor
Gene (Uniprot):vif
Chain IDs:D (auth: F), H (auth: B)
Chain Length:220
Number of Molecules:2
Biological Source:Simian immunodeficiency virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Elongin-B
Gene (Uniprot):ELOB
Chain IDs:B (auth: W), F (auth: D)
Chain Length:118
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Elongin-C
Gene (Uniprot):ELOC
Chain IDs:C (auth: Z), G (auth: E)
Chain Length:112
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural Basis for a Species-Specific Determinant of an SIV Vif Protein toward Hominid APOBEC3G Antagonism.
Cell Host Microbe 26 739 747.e4 (2019)
PMID: 31830442 DOI: 10.1016/j.chom.2019.10.014

Abstact

Primate lentiviruses encode a Vif protein that counteracts the host antiviral APOBEC3 (A3) family members. The adaptation of Vif to species-specific A3 determinants is a critical event that allowed the spillover of a lentivirus from monkey reservoirs to chimpanzees and subsequently to humans, which gave rise to HIV-1 and the acquired immune deficiency syndrome (AIDS) pandemic. How Vif-A3 protein interactions are remodeled during evolution is unclear. Here, we report a 2.94 Å crystal structure of the Vif substrate receptor complex from simian immunodeficiency virus isolated from red-capped mangabey (SIVrcm). The structure of the SIVrcm Vif complex illuminates the stage of lentiviral Vif evolution that is immediately prior to entering hominid primates. Structure-function studies reveal the adaptations that allowed SIVrcm Vif to antagonize hominid A3G. These studies show a partitioning between an evolutionarily dynamic specificity determinant and a conserved protein interacting surface on Vif that enables adaptation while maintaining protein interactions required for potent A3 antagonism.

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Disease

Primary Citation of related structures
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