6P2U image
Deposition Date 2019-05-22
Release Date 2019-06-19
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6P2U
Keywords:
Title:
Structure of Mortalin-NBD with N6-propargyladenosine-5'-diphosphate
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Stress-70 protein, mitochondrial
Gene (Uniprot):HSPA9
Chain IDs:A
Chain Length:385
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
2- and N6-functionalized adenosine-5'-diphosphate analogs for the inhibition of mortalin.
Febs Lett. 593 2030 2039 (2019)
PMID: 31177526 DOI: 10.1002/1873-3468.13475

Abstact

Our early efforts to find a covalent inhibitor of mortalin, a member of the 70 kD heat shock protein (Hsp70) family, led us to solve the structure of the mortalin nucleotide-binding domain (NBD) in complex with N6-propargyladenosine-5'-diphosphate. The acquired structure emphasizes the ability of the nucleotide-binding pocket to accommodate modified ADP compounds. A library of ADP analogs modified at either the 2- or N6-positions of adenosine was screened against the mortalin-NBD. Competitive inhibition and binding assays of the analogs demonstrate that modifications at the 2- or N6-positions have potential to bind and inhibit mortalin uniquely compared to other Hsp70 homologs, and that modifications at the 2-position confer the greatest selectivity in binding and inhibition of the mortalin-NBD.

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